TEM Software Publications Library

This paper reviews advanced data acquisition capabilities available through the SerialEM platform. The software improves automation and efficiency for complex electron microscopy experiments.

The authors develop a fast fiducial-marker tracking model for automated alignment in electron tomography. The algorithm improves processing speed and supports large-scale reconstruction workflows.

This chapter discusses methods for aligning tilt-series datasets used in electron tomography. Accurate registration of projection images improves reconstruction quality and enables more reliable three-dimensional analysis.

This study explores the application of the SOPHIAS detector in synchrotron-radiation X-ray experiments. The detector enhances data acquisition and imaging performance for advanced experimental studies.

cisTEM offers a user-friendly platform for single-particle cryo-EM image processing. Its integrated graphical interface simplifies job management, reconstruction, and high-resolution structure determination.

Dr. Probe is presented as a dedicated tool for high-resolution STEM image simulation and analysis. The software aids interpretation of experimental observations by reproducing image formation processes with strong physical realism.

The authors develop electric-shielding films for biased TEM experiments and in-situ electron holography. The methodology improves measurement accuracy when studying electrically active materials.

The authors apply cepstral analysis to 4D-STEM nano-diffraction data for extracting grain orientations and strain information. The technique reveals structural variations across complex materials with high sensitivity.

The authors present high-resolution resistance mapping techniques implemented within SEM nanoprobing systems. Advances in instrumentation improve measurement sensitivity, speed, and electrical characterization capabilities.

DIALS is a software suite for processing crystallographic diffraction data. The package supports spot finding, indexing, refinement, and integration for structural biology and crystallography research.

This work introduces an unattended SEM-EDS methodology for quantifying asbestos fibers. Automated acquisition and analysis help increase efficiency while maintaining analytical reliability for environmental assessments.

This work employs in-situ SEM and TEM nanomechanical testing to examine wear and failure mechanisms at small length scales. Real-time observations provide insight into deformation, damage evolution, and material reliability.

Xi-cam is a versatile platform for scientific data visualization, management, and analysis. Its extensible architecture supports high-throughput synchrotron workflows and user-defined processing pipelines.

The study uses SEM-EDS analysis to identify multiple phases in alkali-activated slag materials. Understanding phase distribution helps explain the properties and performance of these cementitious systems.

The authors apply phase-field simulations to investigate stress evolution in sodium-ion battery electrode particles. The model helps explain how phase transformations influence mechanical stability during cycling.

This reference provides a concise guide to Python syntax and techniques for data-mining tasks. It serves as a practical resource for data analysis, manipulation, and exploratory workflows.

The authors quantify and optimize ADF-STEM image contrast for beam-sensitive specimens. Their analysis identifies imaging conditions that maximize information while limiting radiation damage.

This study integrates real-time tomography reconstruction with interactive three-dimensional visualization through tomviz. Users can monitor results during acquisition and rapidly evaluate reconstruction quality.

RELION-3 expands automated cryo-EM structure determination with new computational tools and performance enhancements. The software improves processing flexibility and supports high-resolution reconstruction pipelines.

This study presents a method for reducing ring artifacts in synchrotron X-ray tomography through helical acquisition strategies. The technique enhances reconstructed image quality and improves downstream analysis.